MySQL troubles / Update requests

Author Message

Romain Dausset

Tuesday 22 April 2008 2:05:12 am

Hello everybody,

We have lots of Update requests which take about 50s to be executed.

UPDATE ezcontentobject_tree SET modified_subnode=1208854300 WHERE node_id='1' OR node_id='5' OR node |...

Therefore we have between 20 and 30 request in queue, waiting to be executed.

We can see, consequently, database transaction errors and very slow connection and navigation...

Our configuration is the following :

Bi Dual Core Intel® Xeon® 5150, 4MB Cache, 2.66GHz, 1333FSB.

With apache 2.0 / mysql 5.0 on the same server.

eZ 3.9 (Passing in 4.0 is not possible...)

We tried to deporte the database on another server (Dual Core Intel(R) Xeon(TM) CPU 2.60GHz),
but without success... mysqld always takes more than 200% of CPU...

Any ideas to resolve our problem ?

Thank you in advance.

romain.dausset@gmail.com

--
Romain Dausset

rdausset@facileit.com

http://www.facileit.com

Romain Dausset

Tuesday 22 April 2008 2:18:45 am

Our configuration of MySQL is the following :


mysql> show variables;
+---------------------------------+-----------------------------+
| Variable_name                   | Value                       |
+---------------------------------+-----------------------------+
| auto_increment_increment        | 1                           |
| auto_increment_offset           | 1                           |
| automatic_sp_privileges         | ON                          |
| back_log                        | 50                          |
| basedir                         | /usr/                       |
| binlog_cache_size               | 32768                       |
| bulk_insert_buffer_size         | 8388608                     |
| character_set_client            | latin1                      |
| character_set_connection        | latin1                      |
| character_set_database          | latin1                      |
| character_set_filesystem        | binary                      |
| character_set_results           | latin1                      |
| character_set_server            | latin1                      |
| character_set_system            | utf8                        |
| character_sets_dir              | /usr/share/mysql/charsets/  |
| collation_connection            | latin1_swedish_ci           |
| collation_database              | latin1_swedish_ci           |
| collation_server                | latin1_swedish_ci           |
| completion_type                 | 0                           |
| concurrent_insert               | 1                           |
| connect_timeout                 | 5                           |
| datadir                         | /var/lib/mysql/             |
| date_format                     | %Y-%m-%d                    |
| datetime_format                 | %Y-%m-%d %H:%i:%s           |
| default_week_format             | 0                           |
| delay_key_write                 | ON                          |
| delayed_insert_limit            | 100                         |
| delayed_insert_timeout          | 300                         |
| delayed_queue_size              | 1000                        |
| div_precision_increment         | 4                           |
| engine_condition_pushdown       | OFF                         |
| expire_logs_days                | 0                           |
| flush                           | OFF                         |
| flush_time                      | 0                           |
| ft_boolean_syntax               | + -><()~*:""&|              |
| ft_max_word_len                 | 84                          |
| ft_min_word_len                 | 4                           |
| ft_query_expansion_limit        | 20                          |
| ft_stopword_file                | (built-in)                  |
| group_concat_max_len            | 1024                        |
| have_archive                    | YES                         |
| have_bdb                        | NO                          |
| have_blackhole_engine           | NO                          |
| have_compress                   | YES                         |
| have_crypt                      | YES                         |
| have_csv                        | YES                         |
| have_dynamic_loading            | YES                         |
| have_example_engine             | NO                          |
| have_federated_engine           | YES                         |
| have_geometry                   | YES                         |
| have_innodb                     | YES                         |
| have_isam                       | NO                          |
| have_merge_engine               | YES                         |
| have_ndbcluster                 | DISABLED                    |
| have_openssl                    | DISABLED                    |
| have_query_cache                | YES                         |
| have_raid                       | NO                          |
| have_rtree_keys                 | YES                         |
| have_symlink                    | YES                         |
| init_connect                    |                             |
| init_file                       |                             |
| init_slave                      |                             |
| innodb_additional_mem_pool_size | 52428800                    |
| innodb_autoextend_increment     | 8                           |
| innodb_buffer_pool_awe_mem_mb   | 0                           |
| innodb_buffer_pool_size         | 734003200                   |
| innodb_checksums                | ON                          |
| innodb_commit_concurrency       | 0                           |
| innodb_concurrency_tickets      | 500                         |
| innodb_data_file_path           | ibdata1:10M:autoextend      |
| innodb_data_home_dir            |                             |
| innodb_doublewrite              | ON                          |
| innodb_fast_shutdown            | 1                           |
| innodb_file_io_threads          | 4                           |
| innodb_file_per_table           | OFF                         |
| innodb_flush_log_at_trx_commit  | 0                           |
| innodb_flush_method             |                             |
| innodb_force_recovery           | 0                           |
| innodb_lock_wait_timeout        | 50                          |
| innodb_locks_unsafe_for_binlog  | OFF                         |
| innodb_log_arch_dir             |                             |
| innodb_log_archive              | OFF                         |
| innodb_log_buffer_size          | 1048576                     |
| innodb_log_file_size            | 5242880                     |
| innodb_log_files_in_group       | 2                           |
| innodb_log_group_home_dir       | ./                          |
| innodb_max_dirty_pages_pct      | 90                          |
| innodb_max_purge_lag            | 0                           |
| innodb_mirrored_log_groups      | 1                           |
| innodb_open_files               | 300                         |
| innodb_rollback_on_timeout      | OFF                         |
| innodb_support_xa               | ON                          |
| innodb_sync_spin_loops          | 20                          |
| innodb_table_locks              | OFF                         |
| innodb_thread_concurrency       | 8                           |
| innodb_thread_sleep_delay       | 10000                       |
| interactive_timeout             | 28800                       |
| join_buffer_size                | 131072                      |
| key_buffer_size                 | 524288000                   |
| key_cache_age_threshold         | 300                         |
| key_cache_block_size            | 1024                        |
| key_cache_division_limit        | 100                         |
| language                        | /usr/share/mysql/english/   |
| large_files_support             | ON                          |
| large_page_size                 | 0                           |
| large_pages                     | OFF                         |
| lc_time_names                   | en_US                       |
| license                         | GPL                         |
| local_infile                    | ON                          |
| locked_in_memory                | OFF                         |
| log                             | OFF                         |
| log_bin                         | OFF                         |
| log_bin_trust_function_creators | OFF                         |
| log_error                       |                             |
| log_queries_not_using_indexes   | OFF                         |
| log_slave_updates               | OFF                         |
| log_slow_queries                | ON                          |
| log_warnings                    | 1                           |
| long_query_time                 | 10                          |
| low_priority_updates            | OFF                         |
| lower_case_file_system          | OFF                         |
| lower_case_table_names          | 0                           |
| max_allowed_packet              | 16776192                    |
| max_binlog_cache_size           | 4294967295                  |
| max_binlog_size                 | 1073741824                  |
| max_connect_errors              | 10                          |
| max_connections                 | 400                         |
| max_delayed_threads             | 20                          |
| max_error_count                 | 64                          |
| max_heap_table_size             | 16777216                    |
| max_insert_delayed_threads      | 20                          |
| max_join_size                   | 18446744073709551615        |
| max_length_for_sort_data        | 1024                        |
| max_prepared_stmt_count         | 16382                       |
| max_relay_log_size              | 0                           |
| max_seeks_for_key               | 4294967295                  |
| max_sort_length                 | 1024                        |
| max_sp_recursion_depth          | 0                           |
| max_tmp_tables                  | 32                          |
| max_user_connections            | 0                           |
| max_write_lock_count            | 4294967295                  |
| multi_range_count               | 256                         |
| myisam_data_pointer_size        | 6                           |
| myisam_max_sort_file_size       | 2147483647                  |
| myisam_recover_options          | OFF                         |
| myisam_repair_threads           | 1                           |
| myisam_sort_buffer_size         | 8388608                     |
| myisam_stats_method             | nulls_unequal               |
| ndb_autoincrement_prefetch_sz   | 32                          |
| ndb_force_send                  | ON                          |
| ndb_use_exact_count             | ON                          |
| ndb_use_transactions            | ON                          |
| ndb_cache_check_time            | 0                           |
| net_buffer_length               | 16384                       |
| net_read_timeout                | 30                          |
| net_retry_count                 | 10                          |
| net_write_timeout               | 60                          |
| new                             | OFF                         |
| old_passwords                   | OFF                         |
| open_files_limit                | 8410                        |
| optimizer_prune_level           | 1                           |
| optimizer_search_depth          | 62                          |
| pid_file                        | /var/run/mysqld/mysqld.pid  |
| port                            | 3306                        |
| preload_buffer_size             | 32768                       |
| protocol_version                | 10                          |
| query_alloc_block_size          | 8192                        |
| query_cache_limit               | 1048576                     |
| query_cache_min_res_unit        | 4096                        |
| query_cache_size                | 16777216                    |
| query_cache_type                | ON                          |
| query_cache_wlock_invalidate    | OFF                         |
| query_prealloc_size             | 8192                        |
| range_alloc_block_size          | 2048                        |
| read_buffer_size                | 131072                      |
| read_only                       | OFF                         |
| read_rnd_buffer_size            | 262144                      |
| relay_log_purge                 | ON                          |
| relay_log_space_limit           | 0                           |
| rpl_recovery_rank               | 0                           |
| secure_auth                     | OFF                         |
| server_id                       | 0                           |
| skip_external_locking           | ON                          |
| skip_networking                 | OFF                         |
| skip_show_database              | OFF                         |
| slave_compressed_protocol       | OFF                         |
| slave_load_tmpdir               | /tmp/                       |
| slave_net_timeout               | 3600                        |
| slave_skip_errors               | OFF                         |
| slave_transaction_retries       | 10                          |
| slow_launch_time                | 2                           |
| socket                          | /var/run/mysqld/mysqld.sock |
| sort_buffer_size                | 3145720                     |
| sql_big_selects                 | ON                          |
| sql_mode                        |                             |
| sql_notes                       | ON                          |
| sql_warnings                    | OFF                         |
| ssl_ca                          |                             |
| ssl_capath                      |                             |
| ssl_cert                        |                             |
| ssl_cipher                      |                             |
| ssl_key                         |                             |
| storage_engine                  | MyISAM                      |
| sync_binlog                     | 0                           |
| sync_frm                        | ON                          |
| system_time_zone                | CEST                        |
| table_cache                     | 4000                        |
| table_lock_wait_timeout         | 50                          |
| table_type                      | MyISAM                      |
| thread_cache_size               | 8                           |
| thread_stack                    | 131072                      |
| time_format                     | %H:%i:%s                    |
| time_zone                       | SYSTEM                      |
| timed_mutexes                   | OFF                         |
| tmp_table_size                  | 33554432                    |
| tmpdir                          | /tmp                        |
| transaction_alloc_block_size    | 8192                        |
| transaction_prealloc_size       | 4096                        |
| tx_isolation                    | REPEATABLE-READ             |
| updatable_views_with_limit      | YES                         |
| version                         | 5.0.32-Debian_7etch5-log    |
| version_comment                 | Debian etch distribution    |
| version_compile_machine         | i486                        |
| version_compile_os              | pc-linux-gnu                |
| wait_timeout                    | 28800                       |
+---------------------------------+-----------------------------+

Thank you...

--
Romain Dausset

rdausset@facileit.com

http://www.facileit.com

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